Input
  Sequences set   Source file with protein sequences in multiFASTA format Maximum file size is 1 GB.
Output
  Result   Name of the output file
  Format   Result presentation mode examples:
  • Output list of low compl. repeat regions
    
>EXAMPLE SEQ
Masked regions:
p1: 81        p2: 120       l: 40        chain(+) [Low Complexity Region]
p1: 191       p2: 208       l: 18        chain(+) [Low Complexity Region]
    p1: - left position of Low Complexity Region
    p2: - right position of Low Complexity Region
    l: - length of Low Complexity Region
    chain(+) - chain direction
  • Output sequence, masked lett. replaced with X
    
>EXAMPLE SEQ
ASFDPHEKQLIGDLWHKVDVAHCGGEALSRMLIVYPWKRRYFENFGDISNAQAIMHNEKVQAHGKKVLASFGEAVCHLDG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRAHFANLSKLHCEKLHVDPENFKLLGDIIIIVLAAHYPK
DFGLECHAAYQKLVRQVAAALAAEYHIGDLXXXXXXXXXXXXXXXXXX
  • Output sequence, masked lett. are in upper case
    
>EXAMPLE SEQ
asfdphekqligdlwhkvdvahcggealsrmlivypwkrryfenfgdisnaqaimhnekvqahgkkvlasfgeavchldg
EEEEEKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEirahfanlsklhceklhvdpenfkllgdiiiivlaahypk
dfglechaayqklvrqvaaalaaeyhigdlEEEEEEEEEEEEEEEEEE
Options
  Accurancy   Select one of the configuration files:
Normal - default configuration
Sensistive - more sensitive configuration resulting in higher masking percent
Rough - more roung configuration resulting in lower masking percent