Nearest-neighbor SS prediction.

Input sequence for this program should be in fasta format with 80 or less sequence letters per line.

Prediction of protein secondary sturcture by combining nearest-neighbor algorithms and multiply sequence alignments

Overall 3-states (a, b, c) prediction gives ~67.6% correctly predic- ted residues on 126 non-homologous proteins using the jack-knife test procedure. Using multiple sequence alignments instead of single sequences increases prediction accuracy up to 72.2%.