Input
Input Data Folder	Input Data Folder.
Preprocessed Spectra Data Set = "File"	Text file with the names of preprocessed spectra files.
Input Files Format	This parameter specify the format of input files: Space separated values, Comma separated values, Tab separated values.
Extra Data File	Text file with tab-separated data for each sample from data file list: sample index, time of sampling, patient ID, case (cancer=1, non-cancer=0), log value of CA125 marke
Peak Data File	The name of peak data file (result of MSPeakFind program).
Peaks Group Data File	The name of file with peak group data (output of MSPeakAlign program).
Output
Result	Name of output file
Options
Output number of top peaks group	This parameter specify the number of mostly presented peak groups in processed samples for output.