Search for human potential splice sites using weight matrices

The program locates potential splice site positions based on 5 weight matrices for donor sites and a model including dinucleotide composition and weight matrix for acceptor splice site. Program includes prediction of potential GC -donor sites and non-standard splice sites as AT-AC

Program does not exclude splice sites close to sites predicted with higher scores or sites on different chains. User could make processing based on the reported scores. It designed to be useful to analyze alternative Splice variants and non-canonical splice sites. Program has much higher number of overpredicted sites comparing with SPL program.

SplM description

SplM parameters