Prediction of PLANT Promoters (Using RegSite Plant DB, Softberry Inc.)

TSSP predicts potential transcription start positions on plant genomic sequences by linear discriminant function combining characteristics describing functional motifs and oligonucleotide composition of these sites. TSSP uses file with selected factor binding sites from RegSite DB (Plants) developed by Softberry and was trained on PlantProm database developed jointly with Royall Holloway University of London.