Test on-line:

Sequences alignment, Alignment with genome, Alignment genomes.

The programs usage in Scientific publications

FMAP - instantly maps your sequence to human genome draft - click this link to use FMAP.

SCAN2 - program for aligning two multimegabyte-size nucleotid sequences

SCAN2a - program for aligning two multimegabyte-size aminoacid sequences

DBSCAN - database homology search program similar to Blast, but handling multimegabyte-size sequences.

EST_map - Mapping your mRNA/EST to Chromosome sequence of Human genome

PROT_map - mapping of a set of proteins on genome

SMAP - mapping oligonucleotides to genome

Genomes Match - comparison of 2 genomic or chromosomes (with viewer)

Genomes Match 2 - comparison of 2 genomic or chromosomes (without viewer)

Genome Match - Java Alignment browser.

You can also Blast search of your sequence through human/mouse/Drosophila genes/proteins predicted by Softberry from genome sequences using complex script FGENESH++ that combines FGENESH, FGENESH+ and ESTS_MAP programs.

Blast - Comparing your nucleotide sequence with Fgenesh++ set of mRNA/ORF

To view human genome in our Genome Explorer, click here - you can also map your sequence by FMAP in that graphical interface. To view mouse genome, click here.


Multiple alignments

MaliP - Multiple alignment for protein sequences

MaliN - Multiple alignment for nucleotide sequences



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