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Protein Location and Prosite Pattern finding

The programs usage in Scientific publications

Programs presented here address the problem of accurate and fast identification of protein localisation from its sequence, which is essential for many practical applications, including vaccine development, as membrane bound or secreted proteins are more accessible to antibodies than intracellular ones.

ProtComp / Predict the sub-cellular localization for Animal/Fungi proteins [Help]

ProtComp / Predict the sub-cellular localization for Plant proteins [Help]

ProtCompB / Localization of bacterial proteins [Help]

PSITE / Search for Prosite patterns with statistics [Help]

CTL-epitope-Finder / Program for prediction of putative cytotoxic T lymphocyte (CTL) epitopes [Help]


Protein secondary structure

The programs usage in Scientific publications

SSPAL / Nearest-neighbor with local alignments SS prediction [Help]

NNSSP / Nearest-neighbor SS prediction [Help]

SSP / Segment-oriented SS prediction [Help]

SSENVID / Protein secondary structure and environment assignment from atomic coordinates [Help]

PDISORDER / Protein Disorder Prediction [Help]

GETATOMS / Optimization of replaced side chain groups by simulated annealing algorithm [Help]

3d-comp / Structure alignment to superposition [Help]

AbIni3D / Ab inition folding [Help]

MDynSB / Program MDynSB is designed to perform multiple tasks with protein structure [Help]

HMod3DMM / Energy minimization program by molecular mechanic [Help]

PSSFinder / Prediction of protein secondary structure using Markov chains [Examlpe]

CYS_REC / Prediction of SS-bonding States of Cysteines in Protein Sequences [Help]

3D-Match / Comparing 3D structures of two proteins [Help]

3DmodelFit / program for comparison protein 3D model and its original structure [Help]


Protein/DNA 3D-Visual Works

3D-Explorer / Visual works with 3D of a Structure

3D-Comparison / Visualization of Compared by CE 2 Structures

3D-Match / Comparing 3D structures of two proteins

3D-MatchDB / A protein structure comparison by real time search in the PDB database



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