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Search for promoters/functional motifs

The programs usage in Scientific publications

List of Plant Regsite database factors used in TSSP and NSITE-PL programs

FPROM / Human promoter prediction [Help]

PATTERN / pattern search [Help]

TSSP / Prediction of PLANT Promoters (Using RegSite Plant DB, Softberry Inc.) [Help]

NSITE-PL / Recognition of PLANT Regulatory motifs with statistics (RegSite Plant DB, Softberry Inc.) [Help]

NSITEM-PL / Recognition of PLANT Regulatory motifs conserved in several sequences (RegSite Plant DB) [Help]

NSITE / Recognition of Regulatory motifs (Transfac DB, Biobase GmbH, ONLY for academic use) [Help]

NSITEM / Recognition of Conserved Regulatory motifs (Transfac DB, ONLY for academic use) [Help]

NSITEH / Search for functional motifs conserved in a pair of orthologous sequences [Help]

POLYAH / Recognition of 3'-end cleavage and polyadenilation region [Help]

TSSG / Recognition of human PolII promoter region and start of transcription [Help]

TSSW / Recognition of human PolII promoter region and start of transcription (Transfac DB, Biobase GmbH, ONLY for academic use) [Help]

BPROM / Prediction of bacterial promoters [Help]

PromH(G) / Promoter prediction using ortologous sequences in eukaryotic genomes [Help]

PromH(W) / Promoter prediction using ortologous sequences in eukaryotic genomes (only for academic usage) [Help]

CpGFinder / GC-islands finding [Help]

ScanWM-P / Search for weight matrix patterns of plant regulatory sequences [Help]

Motif Explorer / Motif and promoter visualization


Repeats

Find Repeats - find repeats in small genomes

Map Repeats - map repeats in small genomes



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